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61 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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1. AMEN - AMEN (Annotation, Mapping, Expression and Network) is a stand-alone, unified suite of tools to manage, explore and combine biological multifaceted high-throughput data such as annotation, chromosomal location, expression and interaction data.

Click here to download.  
  • Topic: Communications
  • User Interface: Tk
  • Translations: English
  • Programming Language: S/R, Tcl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable
  • Database Environment: Flat-file, Project is a database management tool

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2. analizaprojektu - Statistical analysis of previous planning projects in order to estimate length and cost of current or future ones.


  • Topic: Project Management
  • User Interface: Java SWT
  • Translations: Polish
  • Programming Language: S/R, PL/SQL, Java
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning
  • Database Environment: PostgreSQL (pgsql), JDBC

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3. AW-clust - AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.

Click here to download.  
  • Topic: Bio-Informatics, Information Analysis
  • User Interface: Tk
  • Translations: English
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop, Science/Research
  • Development Status: 5 - Production/Stable

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4. Basketball Simulation Engine - Built with R, this code allows the user to simulate the game of basketball. While the main focus is on simulating the NBA, the code provides a framework for simulating other leagues by modifying the default set of rules.


  • Topic: Simulations
  • Programming Language: C, S/R
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: MIT License
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning

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5. BUGS-R - BUGS-R provides R / S-PLUS packages (http://www.r-project.org) for interface to WinBUGS and OpenBUGS programs.


  • Topic: Scientific/Engineering
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop
  • Development Status: 5 - Production/Stable

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6. Canopy - The Canopy project is an initiative to merge and expand the functionality of Perl-speaks-NONMEM (PsN), Census, Xpose and PopED. The goal is to produce a coherent, inclusive and convenient platform for pharmacometric data analysis.


  • Topic: Bio-Informatics
  • User Interface: Java Swing
  • Programming Language: S/R, Perl, C#, Java, Fortran, Delphi/Kylix
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Healthcare Industry, Science/Research
  • Development Status: 2 - Pre-Alpha

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7. CAStoolsBazaar - CAStoolsBazaar is a collection of software tools for actuaries around the world who are looking for a little more fun while doing their work.

Click here to download.  
  • Topic: Information Analysis
  • User Interface: Project is a user interface (UI) system
  • Programming Language: S/R, C++
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Financial and Insurance Industry
  • Development Status: 1 - Planning

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8. Cell-ID - Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.


  • Topic: Test and Measurement, Bio-Informatics
  • User Interface: GTK+, Command-line
  • Translations: English
  • Programming Language: S/R, C
  • Operating System: OS X, WinXP, Linux
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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9. ClinStudyWeb - ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.


  • Topic: Bio-Informatics, Medical Science Apps., Front-Ends
  • User Interface: Web-based
  • Programming Language: Perl, JavaScript, S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users, Developers, End Users/Desktop, Healthcare Industry, Science/Research
  • Development Status: 4 - Beta
  • Database Environment: Project is a database management tool, Perl DBI/DBD

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10. CNV Workshop - CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV).


  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Programming Language: Java, Perl, S/R
  • Operating System: All POSIX (Linux/BSD/UNIX-like OSes), All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), OS Portable (Source code to work with many OS platforms), 32-bit MS Windows (NT/2000/XP)
  • License: Affero GNU Public License
  • Intended Audience: Science/Research, Healthcare Industry, Information Technology, Developers, Advanced End Users
  • Development Status: 5 - Production/Stable
  • Database Environment: MySQL, JDBC, Perl DBI/DBD

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11. colonyzer - Image analysis software for the quantification of the growth of microorganism colonies (e.g. yeast) on solid agar plates. Suitable for high-throughput analysis of arrays of cultures. Specialises in detection of extremely low cell densities.


  • Topic: Test and Measurement
  • User Interface: Command-line
  • Programming Language: S/R, Python
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 2 - Pre-Alpha

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12. CommandProgramming - command programming techniques


  • Topic: Software Development
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Common Development and Distribution License
  • Intended Audience: Developers
  • Development Status: 1 - Planning

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13. ConDEnSE - ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.


  • Topic: Security, Information Analysis, OLAP, Dynamic Content, Education, Front-Ends
  • User Interface: Web-based
  • Translations: English
  • Programming Language: Zope, S/R, Python, JavaScript
  • Operating System: OS Independent (Written in an interpreted language), OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Non-Profit Organizations, Science/Research, Government, Education, Developers, Advanced End Users
  • Development Status: 2 - Pre-Alpha, 1 - Planning, 4 - Beta
  • Database Environment: Oracle, MySQL, Microsoft Access, Other file-based DBMS, ODBC, Flat-file

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14. Dataverse Network - The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org

Click here to download.  
  • Topic: Social sciences, Object Oriented, Scientific/Engineering, WWW/HTTP, Library
  • User Interface: Web-based
  • Translations: English
  • Programming Language: S/R, JSP, Java
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, System Administrators, Developers
  • Development Status: 4 - Beta
  • Database Environment: PostgreSQL (pgsql), JDBC

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15. decima - Decima is a database that was designed to support time-series data mining. It consists of PostgreSQL custom type definition, implementation of GiST index for that type and snowflake database schema.

Click here to download.  
  • Topic: Database, Bio-Informatics
  • User Interface: Web-based
  • Translations: English
  • Programming Language: C, S/R, PL/SQL, Java
  • Operating System: OS X, Linux
  • License: Apache License V2.0
  • Intended Audience: Science/Research, Developers
  • Development Status: 3 - Alpha
  • Database Environment: PostgreSQL (pgsql)

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16. depmix - depmix is a package for the R statistical computing environment, to fit (multigroup) mixtures of latent Markov models on mixed categorical and continuous (timeseries) data


  • Topic: Mathematics
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning

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17. Distance Analysis Engines - This project is a collection of libraries written in FORTRAN and R for the Distance package (http://www.ruwpa.st-and.ac.uk/distance/) for analysis and design of distance sampling surveys of wildlife populations.

Click here to download.  
  • Topic: Ecosystem Sciences, Mathematics
  • User Interface: Other toolkit
  • Translations: English
  • Programming Language: Fortran, S/R
  • Operating System: All 32-bit MS Windows (95/98/NT/2000/XP), OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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18. dynamo - DynaMo (Dynamic Models) is a package for simulation, estimation, inference, regularization and prediction of time series models, with a special focus on the families of models used in Financial Econometrics.

Click here to download.  
  • Topic: Scientific/Engineering
  • Programming Language: S/R, MATLAB, C
  • Operating System: All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), All 32-bit MS Windows (95/98/NT/2000/XP), All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Financial and Insurance Industry, End Users/Desktop, Developers, Advanced End Users
  • Development Status: 3 - Alpha

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19. dynGraph - dynGraph est un module de FactoMineR qui permet de manipuler des graphiques interactifs.

Click here to download.  
  • Topic: Mathematics
  • User Interface: Java Swing
  • Translations: French, English
  • Programming Language: S/R, Java
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta
  • Database Environment: XML-based

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20. eyemeasures - em is an R package for calculating measures used in psycholinguistic eyetracking reasearch.


  • Topic: Information Analysis
  • User Interface: Plugins
  • Programming Language: S/R, C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 2 - Pre-Alpha

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21. FLR - A library of R packages for use in fisheries modelling, including the evaluation of management strategies and stock assessment.

Click here to download.  
  • Topic: Ecosystem Sciences
  • User Interface: Other toolkit
  • Translations: English
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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22. GenCart: Genome Cartology in R - GenCart: Genome Cartology in the R Statistical Programming Language


  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Translations: English
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • Intended Audience: Advanced End Users, Science/Research
  • Development Status: 1 - Planning

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23. GEOSS - GEOSS (Gene Expression Open Source System), formerly known as GeneX Va, provides a web-based interface for the storage and analysis of Affymetrix GeneChip� and other microarray data. It has been developed by engineers at the GeneChip/Microarray Bioinform

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Web-based
  • Translations: English
  • Programming Language: Perl, S/R
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Development Status: 5 - Production/Stable
  • Database Environment: Perl DBI/DBD

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24. GNUexp - GNUexp is a GNUstep/Cocoa framework and a collection of tools helping you to plan, develop, and administer applications associated with visual psychophysics, experimental psychology and statistical data analysis.


  • Topic: Graphics, Medical Science Apps., Frameworks, Computer Aided Instruction (CAI)
  • User Interface: SDL, Other toolkit, OpenGL, Cocoa (MacOS X)
  • Translations: English, German
  • Programming Language: S/R, C, Objective C
  • Operating System: All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X), OS X
  • License: GNU General Public License (GPL)
  • Intended Audience: Healthcare Industry, Science/Research
  • Development Status: 2 - Pre-Alpha

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25. Ida - Ida is a data analysis application framework that features user interface integration, database support, and bridges to popular statistical analysis packages. Application development is currently focused on the bio-informatic analysis of microarrays.


  • Topic: Information Analysis, User Interfaces, Frameworks, Bio-Informatics
  • User Interface: Web-based, wxWidgets
  • Programming Language: Zope, S/R, Python
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Advanced End Users, Developers, Science/Research
  • Development Status: 2 - Pre-Alpha

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26. iramuteq - IRAMUTEQ : Interface de R pour les Analyses Multidimensionnelles de Textes et de Questionnaires. Logiciel de traitement de données pour des corpus texte ou de type individus/caractères. Permet notamment de réaliser des analyses de type "ALCESTE".


  • Topic: Linguistics, Information Analysis, Psychology
  • Programming Language: Python, S/R
  • Operating System: OS Independent (Written in an interpreted language), OS X, WinXP, Vista, Windows 7, Linux
  • License: GNU General Public License (GPL)
  • Development Status: 3 - Alpha

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27. jr-extension - Important support for JR project. Package for spacial data. Eclipse plugin. Integration with weka


  • Topic: Mathematics, Financial
  • User Interface: AAlib
  • Translations: English
  • Programming Language: Python, Java, C, S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers
  • Development Status: 1 - Planning
  • Database Environment: MySQL

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28. jr-project - Main part of JR (Java R) Project. Implementation of R language and platform with Java. 4 tiers J2EE architecture with jboss. UI: Swing and Web Business: weka support, Jboss seam Persistant: OR Mapping, Jboss Hibernate Data: JDBC support.


  • Topic: Mathematics, Bio-Informatics
  • User Interface: AAlib
  • Translations: English
  • Programming Language: S/R, Python, Java, C
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers
  • Development Status: 1 - Planning
  • Database Environment: MySQL, JDBC

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29. K-OPLS - An implementation of the Kernel-based Orthogonal Projections to Latent Structures (K-OPLS) method for MATLAB and R. The supplied functionality includes e.g. cross-validation, model diagnostics and plot tools.

Click here to download.  
  • Topic: Information Analysis, Bio-Informatics, Artificial Intelligence
  • User Interface: Console/Terminal
  • Translations: English
  • Programming Language: S/R, MATLAB
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Information Technology, Science/Research
  • Development Status: 5 - Production/Stable

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30. Life Cycle Assessment Spreadsheet - The Life Cycle Assessment Spreadsheet allows you to calculate carbon footprints and other environmental impacts for given product systems. Use requires basic skills in LCA and matrix algebra, but rewards effort with professional analytical tools.

Click here to download.  
  • Topic: Accounting, Ecosystem Sciences
  • User Interface: Plugins
  • Translations: English
  • Programming Language: Visual Basic, S/R
  • Operating System: OS Independent (Written in an interpreted language), All 32-bit MS Windows (95/98/NT/2000/XP)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Government, End Users/Desktop
  • Development Status: 1 - Planning, 2 - Pre-Alpha

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31. Lithic Experiment and Anlysis Software - LEX-AS is a relational database frontend providing management and analysis functions for stone tool research. Developed in Python, using R-Project for analysis and visualization.


  • Topic: Front-Ends, Information Analysis
  • User Interface: GTK+
  • Programming Language: S/R, Python
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning, 2 - Pre-Alpha
  • Database Environment: Python Database API

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32. mipfe - Minimum Information for Protein Functionality Evaluation (MIPFE).


  • Topic: Information Analysis, Bio-Informatics
  • User Interface: Web-based
  • Programming Language: S/R, PHP, Python, C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning
  • Database Environment: Other file-based DBMS, XML-based, SQL-based, Python Database API, PHP Pear::DB

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33. msBayes - msBayes allows complex and flexible phylogeographic inference. More specifically, you can test the simultaneous divergence (TSD) of multiple population (species) pairs. It uses approximate Bayesian computation (ABC) under a hierarchical model.


  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Translations: English
  • Programming Language: S/R, Perl, C
  • Operating System: Linux, OS X, All POSIX (Linux/BSD/UNIX-like OSes)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 5 - Production/Stable

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34. mzmatch - mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.


  • Topic: Bio-Informatics, Chemistry, Molecular Science
  • User Interface: Java SWT
  • Translations: English
  • Programming Language: Java, S/R, C
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research, Developers
  • Development Status: 4 - Beta

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35. NetWorkSpaces for R - NetWorkSpaces, developed by Scientific Computing Associates Inc., provides a framework to coordinate programs written in R. It allows users to write parallel programs in R easily.

Click here to download.  
  • Topic: Distributed Computing, Mathematics, Clustering
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Development Status: 5 - Production/Stable

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36. neuRonalysis - This project aims at developing R-based Software for the analysis of typical neuroscientific data. These will include time resolved bootstrap tests and fitting and testing of psychometric functions.


  • Topic: Scientific/Engineering
  • Programming Language: S/R
  • Operating System: OS Portable (Source code to work with many OS platforms), OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning

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37. Oce, an R package for oceanographers - An R package for analyzing Oceanographic data, including CTD measurements, sea-level timeseries, etc., with functions for calculating fundamental seawater properties such as density and derived properties such as buoyancy frequency.


  • Topic: Earth Sciences
  • Translations: English
  • Programming Language: S/R
  • Operating System: Microsoft Windows 3.x, All BSD Platforms (FreeBSD/NetBSD/OpenBSD/Apple Mac OS X)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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38. octopus-project - Octopus is a web-based financial management software


  • Topic: Financial
  • User Interface: Web-based
  • Programming Language: S/R, Perl
  • Operating System: OS Independent (Written in an interpreted language)
  • License: BSD License
  • Intended Audience: Financial and Insurance Industry, Developers, Science/Research, End Users/Desktop, Advanced End Users
  • Development Status: 1 - Planning
  • Database Environment: PostgreSQL (pgsql)

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39. P2EMA - P2EMA (Perl Pipeline to Expedite Microsatellite Analysis)


  • Topic: Bio-Informatics
  • User Interface: Tk
  • Programming Language: Perl, S/R
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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40. Phonmisc - R package for phonetic research.


  • Topic: Information Analysis
  • User Interface: Command-line
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 1 - Planning

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41. PROMPT - PROMPT is a system for retrieval, analysis, mapping and comparison of proteins. It allows easy mapping of different types of sequence IDs, data retrieval and integration, a multitude of analysis and comparison algorithms and a full-blown easy to use GUI.

Click here to download.  
  • Topic: Bio-Informatics, Visualization, Information Analysis
  • User Interface: Java Swing
  • Programming Language: Java, S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • Intended Audience: Science/Research, End Users/Desktop, Information Technology
  • Development Status: 5 - Production/Stable

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42. R + Java = Inf - For software developers in domains involving statistical analysis, the "R + Java = Inf" project analyses and enhances the interoperability between the R and Java programming languages. The deliverables are source code, documentation and benchmarks.


  • Topic: Software Development
  • Programming Language: S/R, Java
  • Operating System: OS Portable (Source code to work with many OS platforms), OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Healthcare Industry, Science/Research, Financial and Insurance Industry, Developers
  • Development Status: 1 - Planning

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43. R Package for the Analysis of DCE-MRI - A collection of code, bundled into a single R package, to perform several aspects of data management, image pre-processing, data analysis and statistical inference related to the quantitative analysis of dynamic contrast-enhanced MRI (DCE-MRI).


  • Topic: Mathematics, Medical Science Apps.
  • User Interface: Command-line
  • Programming Language: C++, S/R
  • Operating System: Linux, 32-bit MS Windows (NT/2000/XP), OS X
  • License: BSD License
  • Intended Audience: Science/Research, Healthcare Industry, End Users/Desktop
  • Development Status: 4 - Beta

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44. R Packages for proteomics - We use R (www.r-project.org) in order to generate a greater specificity and sensitivity of protein identification by Mass Spectrometry. These functions are implemented as add-on packages to the open source GPL software R.


  • Topic: Bio-Informatics, Chemistry, Physics
  • Translations: English
  • Programming Language: S/R, C
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Education, Healthcare Industry
  • Development Status: 2 - Pre-Alpha

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45. R Unit Test Framework - R Unit test framework R functions implementing a standard Unit Testing framework, with additional code inspection and report generation tools

Click here to download.  
  • Topic: Testing, Source code analysis
  • User Interface: X Window System (X11)
  • Translations: English
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers, Quality Engineers
  • Development Status: 5 - Production/Stable

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46. R-based genetic algorithm. - R based genetic algorithm for optimization, variable selection and other machine learning and statistical analysis approaches.


  • Topic: Information Analysis
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers
  • Development Status: 5 - Production/Stable

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47. R-ggorjan collection of packages for R - r-ggorjan is a collection of addon packages for R (http://www.r-project.org)


  • Topic: Scientific/Engineering
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop

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48. R2Pajek - R (http://www.r-project.org) interface to Pajek (http://vlado.fmf.uni-lj.si/pub/networks/pajek/)


  • Topic: Scientific/Engineering
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers, Advanced End Users, End Users/Desktop

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49. RBanking - RBanking is an offline banking tool that adds the power of R (statistical computing and graphics) to your banking data. Download the information of your accounts online and then use this tool to process this data, create reports and graphs.


  • Topic: Spreadsheet
  • User Interface: Tk
  • Translations: Dutch
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop
  • Development Status: 2 - Pre-Alpha

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50. RmiR - RmiR is an R package for the analysis of microRNA and gene expression microarrays. The package is designed to coupling microRNA and gene expression data, using different databases, like TargetScan, mirBase, picTar,TarBase and others...

Click here to download.  
  • Topic: Bio-Informatics
  • User Interface: Command-line
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: Artistic License, GNU Library or Lesser General Public License (LGPL)
  • Development Status: 4 - Beta
  • Database Environment: SQL-based

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51. rNMR - Software for visualizing and interpreting NMR data, with an emphasis on metabolomics. Go to the rNMR homepage at http://rnmr.nmrfam.wisc.edu for more details.


  • Topic: Bio-Informatics
  • User Interface: Tk, Console/Terminal, X Window System (X11), Win32 (MS Windows)
  • Translations: English
  • Programming Language: S/R
  • Operating System: Linux, OS X, WinXP, Vista, Windows 7
  • License: GNU General Public License version 3.0 (GPLv3)
  • Intended Audience: Science/Research

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52. Rqt - Rqt is a library for calling R functions within C++/Qt4 applications. The argument interface uses QVariant for flexible exchange of data to and from R. This allows R calls as if they were part of the local Qt environment.

Click here to download.  
  • Topic: Scientific/Engineering
  • Programming Language: S/R, C++
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Science/Research, Developers
  • Development Status: 3 - Alpha

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53. RT4Bio - R Tools for Biologists (RT4Bio) is a multi-functional package writen in R language developed in the Laboratory of Behavioral and Computational Ecology at State University of Montes Claros - MG - Brazil. Formerly known as RRJ.

Click here to download.  
  • Topic: Bio-Informatics, Ecosystem Sciences
  • User Interface: Command-line
  • Translations: Brazilian Portuguese
  • Programming Language: S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research, Education
  • Development Status: 4 - Beta

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54. SIPES - SIPES (Security Incident Pollicy Enforcement System) aims to provide an automated e-mail,XML and PKI based system for automated security policy enforcement based on statefull risk assesment and open exchange formats.

Click here to download.  
  • Topic: Systems Administration, Security, Monitoring, Office/Business
  • User Interface: Non-interactive (Daemon), X Window System (X11), Win32 (MS Windows)
  • Translations: English
  • Programming Language: C++, S/R, C
  • Operating System: All POSIX (Linux/BSD/UNIX-like OSes), OS X, Cygwin (MS Windows)
  • License: GNU General Public License (GPL), GNU Library or Lesser General Public License (LGPL)
  • Intended Audience: Financial and Insurance Industry, System Administrators, Information Technology, Legal Industry
  • Development Status: 1 - Planning, 7 - Inactive

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55. spdep - spdep: Spatial dependence: weighting schemes, statistics and models


  • Topic: Mathematics, GIS, Earth Sciences
  • User Interface: Console/Terminal
  • Programming Language: S/R, C
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: End Users/Desktop, Developers, Science/Research, Advanced End Users
  • Development Status: 5 - Production/Stable

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56. The igraph library - This is another library for creating and manipulating graphs. There is simply no other graph library out there which can handle graphs of the size the author is confronted with. Whenever possible igraph tries to be also user friendly and portable.

Click here to download.  
  • Topic: Mathematics
  • Programming Language: C, S/R, Python
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 4 - Beta

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57. Thesaurus of Mathematical Languages - Quick reference for switching between mathematical computation environments for computer algebra, numeric processing and data visualisation. Examples are Matlab, IDL, SPlus, and their open-source counterparts Octave, Scilab, Python+NumPy and R.


  • Topic: Documentation, Visualization, Mathematics
  • Translations: English
  • Programming Language: S/R, Python, MATLAB, IDL
  • Operating System: OS Independent (Written in an interpreted language)
  • License: BSD License
  • Intended Audience: Developers, Science/Research, Advanced End Users
  • Development Status: 1 - Planning

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58. Vennerable - An R package for the display of Venn diagrams

Click here to download.  
  • Topic: Visualization
  • User Interface: Command-line
  • Programming Language: S/R
  • Operating System: OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License (GPL)
  • Intended Audience: Science/Research
  • Development Status: 3 - Alpha

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59. Virtual Laboratory Environment - VLE is a DEVS environment (simulator, modeling and analysis softwares) for Multi-Modeling and Simulation of Complex Systems. VLE is based on the DEVS formalism (DSDE abstract simulator) and CellDEVS, DESS, QSS, CellQSS, Petri net, etc. extensions.

Click here to download.  
  • Topic: Artificial Intelligence, Simulations, Ecosystem Sciences
  • User Interface: GTK+
  • Translations: French, English
  • Programming Language: C++, C, Python, Java, S/R
  • Operating System: All POSIX (Linux/BSD/UNIX-like OSes), OS X, WinXP, Vista, Windows 7, OS Portable (Source code to work with many OS platforms)
  • License: GNU General Public License version 3.0 (GPLv3)
  • Intended Audience: Science/Research, Education, Advanced End Users, Engineering, Agriculture, Manufacturing
  • Development Status: 5 - Production/Stable, 6 - Mature

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60. Vyper Dynamic Server - The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.


  • Topic: Financial, Information Analysis, Frameworks
  • User Interface: Java Swing
  • Programming Language: Java, S/R
  • Operating System: OS Independent (Written in an interpreted language)
  • License: GNU General Public License (GPL)
  • Intended Audience: Developers, Financial and Insurance Industry, Telecommunications Industry, Education
  • Development Status: 2 - Pre-Alpha
  • Database Environment: SQL-based, JDBC, Berkeley/Sleepycat/Gdbm (DBM)

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61. XT-SDTM - XT-SDTM is a web application for making clinical data summary and getting results of statistical analysis via CDISC SDTM. If you want to join this project, please contact me. ippei.aki@gmail.com


  • Topic: Medical Science Apps.
  • User Interface: Web-based
  • Programming Language: S/R, Ruby
  • Operating System: Linux, OS X
  • License: GNU Library or Lesser General Public License (LGPL)
  • Development Status: 2 - Pre-Alpha

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61 projects in result set. Projects sorted by: Ranking (Top Ranked First)
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